CDS

Accession Number TCMCG016C05880
gbkey CDS
Protein Id OMO93778.1
Location complement(join(34813..34911,35374..35436,35596..35682,35848..35955,36098..36187,36551..36637,36712..36822,36909..37016,37220..37330,37398..37466,37546..37674,37761..38009,38094..38770,39553..39651,39804..39929,40021..40228,40458..40507,40602..40758))
Organism Corchorus capsularis
locus_tag CCACVL1_06355

Protein

Length 875aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215142; BioSample:SAMN03290679;
db_source AWWV01008041.1
Definition putative Ribosome-binding protein [Corchorus capsularis]
Locus_tag CCACVL1_06355

EGGNOG-MAPPER Annotation

COG_category S
Description Synaptonemal complex protein
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko03036        [VIEW IN KEGG]
KEGG_ko ko:K19533        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0000228        [VIEW IN EMBL-EBI]
GO:0000280        [VIEW IN EMBL-EBI]
GO:0000793        [VIEW IN EMBL-EBI]
GO:0000794        [VIEW IN EMBL-EBI]
GO:0000795        [VIEW IN EMBL-EBI]
GO:0000802        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005694        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006310        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0007049        [VIEW IN EMBL-EBI]
GO:0007059        [VIEW IN EMBL-EBI]
GO:0007127        [VIEW IN EMBL-EBI]
GO:0007129        [VIEW IN EMBL-EBI]
GO:0007131        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0022402        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0035825        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044427        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044454        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045132        [VIEW IN EMBL-EBI]
GO:0045143        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048285        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0051321        [VIEW IN EMBL-EBI]
GO:0061982        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070192        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0098813        [VIEW IN EMBL-EBI]
GO:0099086        [VIEW IN EMBL-EBI]
GO:0140013        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1903046        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGCAGAAACTAGGGTTTCCAAGCATGAAAAGCTTGGATCGTTTGAAATCCTTACCGGGATCCGGCTCTGGAGCCGCGAAAACCTTCTCATTCTCTCCCCGTCCATCTTCCAATTCAGCTTCACTTGGAAGTTTCACGAATTTAAAATTAACTGCAGAGAAACTTGTTAAAGAACAAGCTTCTGTGAAGACCGATCTGGAAATGGCGAATTCTAAGCTGAAGAAATCGATGGAACATATCCGTGTATTAGAGGAAAAGTTGCAGTTTGCTTTCAATGAGAATGCCAAACTCAAAGTAAAGCAAAAGGAAGATGAGAAGCTCTGGAAAGGTCTGGAGTCTAAGTTCTCTTCAACTAAGACTCTGTGTGATCAACTCACTGATACCTTACAGCATTTGGCTAGTCAGGTTCAGGATGCTGAGAAAGATAAGGAGCTTATTGAAGGCAAACTTTCTGAAAACTCGAAAGCAATAGACACATTGAACGAACATATGAATGGCCTTTCTTTGAAGTTAAGTTCTGCTGAGGAAACAATCAGAAAGCGCGGAAAAGAAATAGAAGAACTAAAGTTTGAGAAAGAGGAAAATAATAGGTTTTACAGGGATGAACAGTGCAAAACTGCGAATCTCATTGAGGAAAAAGATGCTCTTATAAAGAAATTTGAAGCAACTGTAGCAGCAAGTAAACAGGCTGCAGAGAGTTTGAACTCTAAAATGGAAGAAGTTCAGTTTGAGTTGAGATTAAAAGAAGATGAGATAAAATGCTTGCTAACCACTCAAGAGAACCTGGAGAAAGAGAAAACTGACCTTCTGTCGAGCAATGATGGATTTGCTAAAAAGCTATCAAAATCATTCCAAGAGATTAAGTATCTTGAAGGTTTTGTTGCCGTGTTGGCTGCGCAGTTGGTTGAACTGGATAAACAAAATCTGACTTTTACTGCAAAGTTTGATGAACTAAGTTCTCTCTATGACACTTGTTTTGAGTTAGTCCAACAGGAGAGGGATCTTGCTGCTAAGCATGCTCAAAGGAAGTATGAACAACTCCATGATAAATTCTTGTGCATCACCTCAGAAAGAGATGCATTAAAATTGGTGAACCAGGAGTTAAACAGTAAGATAATTGAACTTCAGAAAGCCCAAGAGTCTGTCATGGCCCAACTTTCAGAAGAATGCCATTTAGCAGGAGTGAGAATCCAGAAGTTGGAATCTGAAGCAGAAACTCTGGTCTCAAAGAAGATTGAAGCAGATAAGTTGGTTTCACAATTGGAGGAAAAGATTGACATGTTGTCTGAGAGTTCAAGATCATCTGAGAATAAAATGCAAGACCTATTGCTCAAAATTTCTTCTCTGGAAAAGGAGAACAAAGATAATACAGAGAAAATGCAAGCAGAGATAAGGAGCAAAACAGAAGAAATAGATATTTTGAAAAAGGAGTGTGAGAAACATGAGGTGCAGCTAGAGTCCTTGAAGCAACAAGTGGGTCAGCTACAGGTCATGTTAGAGGAAAAGGAACAGCTTATCCTGCAGTATAAAGAAAGTGAAAAGAAACTGGAAGATCAAATTTTACAGAATAAGGAAATGCTGACAGCTACTGAAAGTAAACTCGTGGAAGCCAGGAAGCAATATGATGCGATGCTAGAAAGTAAGCAGCTAGAGTTATCTAGACACTTGAAAGAAATATCTCAAAGGAATGATCAGGCAATTAATGACATACGGAAGAAGTATGAGGTGGAGAAGCAGGAGATTGTTAAACTGGAAAAAGAGAAGGCTGACAGAGTTGTTGGAGAAATGGAACAGAGATGTGACCAGAAGATTGCAGAATGCAAAGAAGAATCAAGGCTCAGCTTGTCATGCATTCAAGAGGAGAATGCTGCTTTAGTCACTAATCTTCAGCAGGAACATGACAGAAAGGTACTAAGTCTCAAAGCTGACCATCATGAGAAGCTAAAACGTGCCCAGCTTCAGGCAGAAGATGAATTGAGAGAGAAAACAACATCTCTTAGGAACGAACATGAAGTTCAGATGAAAGCTTTGAGGTGTCAATTTGAAGATGAGTGCACTAAGCTCCAGGAGGAGTTGAGTCTCCAGAAGTCCAAAGAAAACAGACAGAGGGCTTTATTGCAAATGCAGTGGAGGGTAATGAGTGACAAACCACAAGAAGAACAAGAAGTGAATTCAAAAAAGGATTACTCCACTTCTTCAATCAAGATGAGAGATTCTGATGTTCAAAAAAGAAACCAAAATGCTCTGATAAGGCCAGAGAATGAAGAGAAGGAATCACCATTCCCAGTTGTAACACAAACACCAGTGTCAAAATTGTTGAAGAAAGTAGAGAATGCCAACACAGGAACTGTGATGAGCATCCCAAAGCATCATAAGAAGGTAACCCGCCGTGAATATGAAGTTGAAACTACCAATGGAAGAACAGTGACAAAACGAAGAAAGACTAGAAGTACGGTCTTATTTGAGGATCCAAGGAAACAGAAGAACGCGCGTACACCACAAGCCAATACCCCAAGAAGTTGTGTAAAGGGAACTAAGGGAAGTCATCCAAAAGCTTCAAACATTGGTGATTTGTTTTCAGAAGGTTCTCTAAATCCTTATGCAGATGACCCATATGCATTTGAATAA
Protein:  
MQKLGFPSMKSLDRLKSLPGSGSGAAKTFSFSPRPSSNSASLGSFTNLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHIRVLEEKLQFAFNENAKLKVKQKEDEKLWKGLESKFSSTKTLCDQLTDTLQHLASQVQDAEKDKELIEGKLSENSKAIDTLNEHMNGLSLKLSSAEETIRKRGKEIEELKFEKEENNRFYRDEQCKTANLIEEKDALIKKFEATVAASKQAAESLNSKMEEVQFELRLKEDEIKCLLTTQENLEKEKTDLLSSNDGFAKKLSKSFQEIKYLEGFVAVLAAQLVELDKQNLTFTAKFDELSSLYDTCFELVQQERDLAAKHAQRKYEQLHDKFLCITSERDALKLVNQELNSKIIELQKAQESVMAQLSEECHLAGVRIQKLESEAETLVSKKIEADKLVSQLEEKIDMLSESSRSSENKMQDLLLKISSLEKENKDNTEKMQAEIRSKTEEIDILKKECEKHEVQLESLKQQVGQLQVMLEEKEQLILQYKESEKKLEDQILQNKEMLTATESKLVEARKQYDAMLESKQLELSRHLKEISQRNDQAINDIRKKYEVEKQEIVKLEKEKADRVVGEMEQRCDQKIAECKEESRLSLSCIQEENAALVTNLQQEHDRKVLSLKADHHEKLKRAQLQAEDELREKTTSLRNEHEVQMKALRCQFEDECTKLQEELSLQKSKENRQRALLQMQWRVMSDKPQEEQEVNSKKDYSTSSIKMRDSDVQKRNQNALIRPENEEKESPFPVVTQTPVSKLLKKVENANTGTVMSIPKHHKKVTRREYEVETTNGRTVTKRRKTRSTVLFEDPRKQKNARTPQANTPRSCVKGTKGSHPKASNIGDLFSEGSLNPYADDPYAFE